Microbiome & eDNA Analysis

Our Microbiome & eDNA Analysis service provides a comprehensive solution for researchers, companies, and environmental agencies seeking to analyze microbial communities and conduct environmental monitoring through environmental DNA (eDNA). Using next-generation sequencing technologies and advanced bioinformatics pipelines, we transform environmental samples into precise and actionable biological data.

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What Do We Offer?

Metagenomic and Metataxonomic Analyses

  • Identification and quantification of microbial communities (bacteria, archaea, fungi, viruses)

  • Alpha and beta diversity assessment

  • Comparison between samples and experimental groups

eDNA for Environmental Monitoring and Biodiversity

  • Detection of species in soil, water, and air samples

  • Biodiversity monitoring without the need for invasive sampling or habitat disturbance

  • Applications for conservation studies, environmental impact assessments, and bioremediation

Microbial Functionality & Antibiotic Resistance

  • Prediction of metabolic functions in microbial communities

  • Identification of genes associated with antibiotic resistance (ARGs)

  • Investigation of ecological interactions among microorganisms

Comparison with Reference Databases

  • Use of international microbiome and eDNA databases

  • Advanced phylogenetic and taxonomic analysis

  • Generation of OTUs (Operational Taxonomic Units) or ASVs (Amplicon Sequence Variants)

Personalized Reports & Scientific Consulting

  • Intuitive graphical visualizations

  • Data interpretation tailored for scientific or business applications

  • Support for article publication and regulatory report submissions

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Full workflow packages (Wet Lab + Bioinformatics)

Essential Microbiome Package –

Metabarcoding & Taxonomy

Ideal for microbiome profiling with a focus on species composition.


✔ DNA extraction (from soil, water, fecal, tissue, or custom sample types)
✔ Amplification of target marker (16S rRNA, 18S rRNA, ITS, COI, or custom)
✔ Library preparation & sequencing (~50,000–100,000 reads/sample)
✔ Taxonomic classification using curated reference databases
✔ Alpha & beta diversity analysis
✔ Functional prediction (PICRUSt2 or equivalent)

Price: $250–$400 per sample

Premium Shotgun Metagenomics –

Multi-Omics & ARG Screening

Ideal for advanced microbiome research, pathogen surveillance, and environmental monitoring.


✔ DNA extraction & library preparation for whole metagenome sequencing
✔ Shotgun metagenomic sequencing (5–10 million reads/sample)
✔ High-resolution taxonomic classification
✔ Antibiotic resistance gene (ARG) detection
✔ Identification of secondary metabolite genes
✔ Functional pathway analysis
✔ Host-associated microbiome interaction insights
✔ One-on-one expert consultation & custom visualizations

Price: $800–$1500 per sample

Bioinfomatics-only PAckages (For Users with Sequencing Data)

Basic Bioinformatics –

Metabarcoding & Taxonomy

For users who have raw sequencing data and need species-level insights.


✔ Processing of 16S/18S/ITS/COI sequencing data
✔ Taxonomic classification with curated reference databases
✔ Alpha & beta diversity metrics
✔ Functional prediction for microbial communities (PICRUSt2 or Tax4Fun)
✔ Interactive visualizations & standard report

Price: $100–$200 per sample

Comprehensive Bioinformatics –

ARGs, Metabolites & Functional Insights

For researchers requiring advanced bioinformatics without sequencing.


✔ Processing of metagenomic (shotgun) data
✔ Taxonomic classification (whole-genome level precision)
✔ Antibiotic resistance gene (ARG) screening (ResFinder, CARD)
✔ Secondary metabolite biosynthesis gene detection (NRPS, PKS via antiSMASH)
✔ Functional annotation & pathway analysis (KEGG, MetaCyc)
✔ Comparative analysis between sample groups
✔ Customizable reports & data visualization

Price: $400–$700 per sample

Volume Discounts & Custom Pricing

For large projects (20+ samples), we offer customized pricing and support. Get in touch for a tailored quote based on sample type, sequencing depth, and analysis complexity.

Let’s turn your microbiome data into actionable insights!